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We collaborate with:
UAB
The Niederweis Group

UIUC
The Aksimentiev Group

NHGRI
CENPA
David Feldman, Liz Manrao, Kyle Langford, Jeney Wierman, Marcus Collins, Ian Derrington, Jens H. Gundlach
About Our Group
We are a diverse group of scientists with experience ranging from biochemistry, to instrumentation, to hard-core physics. Below you can read more about individuals in our lab, as well as our collaborators at other institutions.
Personnel
Prof. Jens Gundlach
Contact: jens #at# phys #dot# washington #dot# edu
Jens started his career at the University of Washington studying nuclear physics (PhD, 1990) then became a gravitatioal physicist. He stumbled upon nanopore sequencing seven years ago and really wanted to try this out himself. When his then-gravity student Tom Butler heard about the idea, he came aboard, our project was born and the enthusiasm could not be stopped anymore. Jens now splits his time and runs two labs: his gravity group, and our nanopore physics group. That makes our lab an especially diverse and entertaining place to work.

Ian Derrington
Contact: iand #at# u #dot# washington #dot# edu       Website: Ian's Homepage
Ian Derrington graduated in 2005 from the University of Colorado, Boulder with degrees in Applied Mathematics, and Summa Cum-Laude in Engineering Physics. Since late 2006 he has pursued his doctoral research with the group helping to design and test and MspA for DNA sequencing. His first publication with the group is also our first paper in PNAS! It can be found here or here.

Elizabeth Manrao
Physics graduate student Liz Manrao, joined the group in autumn 2008. Liz got her undergraduate degree from university of XXX.

Kyle Langford
A third year undergraduate in Biochemsitry, Kyle is our primary lab tech. He keeps us running with day-to-day prep work but is also pursuing his own scientific project to study how longer stretches of DNA pass through MspA.

David Feldman
David is an undergraduate in Physics. He joined the group in autumn 2008 and is working with Ian and Marcus to develop new data analysis techniques.

Jeney Wierman
Jeney is an undergraduate physics major here at UW, and a biology major at Seattle Pacific University, minoring in chemistry. She's the president of the Society of Physics Students, and the Outreach Coordinator of the Undergraduate Women in Physics group. She plans to attend graduate school in biophysics within a year, and enjoys staying active outdoors in her free time.

Dr. Mark Troll
Contact: gmmtroll #at# gmail #dot# com
Dr. Troll helped Tom and Jens found the nanopore group. With his extensive knowledge of biochemistry and microbiology, he kept the physicists in the group grounded in the realm of biology. He is now CEO and President of Aaron Thermionics working on really (controlable) cool stuff but still finds time to help advise the group in scientific matters.

Our Collaborators
Prof. Michael Niederweis
Contact: mnieder #at# uab #dot# edu      Website: Niederweis' Homepage
Dr. Niederweiss is Professor of Microbiology at the University of Alabama at Birmingham. He has isolated MSPA out of its native biological enironment and is now modifying it for this project. His publications on MspA, including the Science article describing the structure, can be found at PubMed.

Mikhail Pavlenok
Contcact: pavlenok #at# uab #dot# edu
Mikhail is a research scientist at UAB helping with the development of MSPA for use in DNA sequencing.

Prof. Alek Aksimentiev
Contact: aksiment #at# illinois #dot# edu
Alek is an alumni of Klaus Schulten's world-leading molecular dynamics simulation group at the University of Illinois, Urbana-Champaign, and is now Professor of Physics there. He has developed new methods for the study of DNA and polymer transport through nanopores. He joined our collaboration in autumn 2008 to simulate MspA for rapid testing of new MspA design ideas. Some of Alek's work can be found by following this link.

Alumni
Dr. Tom Butler
Contact: twb2 #at# u #dot# washington #dot# edu
Tom Butler started this project with Jens Gundlach on a shoestring and the vaguest whiff of hope. His 2007 Ph.D. thesis Nanopore Analysis of Nucleic Acids recieved the department's thesis prize. Tom was a postdoc in the lab until August 2008 when he decided to teach high school mathematics at the prestigious Lakeside School in Seattle.

Risa Wong
Contact: risawong #at# u #dot# washington #dot# edu
Risa joined the lab in 2005 at age 17 and became an Amgen Scholar in the summer of 2007. She worked on various aspects of nanopore sequencing, but will seek greener pastures in medical school...


Dr. Marcus Collins
Contact: mdcollins #at# chem #dot# washington #dot# edu>
Marcus Collins was an undergraduate here at UW, received his Ph.D. in Physics from Cornell University in Sol M. Gruner's lab, and was a postdoc for Sarah Keller before joining the UW Nanopore Group in summer of 2008 and left the summer of 2009. Dr. Collins' (and hopefully only this Dr. Collins') publications can be found here.

Meredith Brown
Meredith was an undegraduate physics student with us in 2008

K. Aurelia Ball
In 2006 Lia was an REU student from Middlebury College in Vermont. After spending her summer with our group she wrote a pretty amazing undergraduate thesis about conductance in MspA. Lia is now a graduate student in biophysics at UC Berkeley.

Hannah Gelman
In 2005 Hannah was our first REU student. She came from Dartmouth College. After graduating she signed up for Teach for America (Germantown High School) but she will now begin graduate school in Physics.

Ryan Loney
Ryan was an Amgen Scholar from Reed College, who spent his 2008 summer with us debugging and testing our new ultra-low noise voltage clamp amplifier.

Mats Frederickson
Mats was an undergraduate student with us working on modeling and visualizing DNA translocations through nanopores.

Ian Silverman
Ian was an Amgen Scholar from Birmingham University, and spent his 2009 summer helping to implement microfluidic systems, and improve bilayer-making techniques for the lab.
Useful links

PubMed




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